GPR83: A Novel Treg Expressed Cell Surface Marker

February 24th, 2008

GPR83 is a member of the Orphan-A G-Protein coupled receptor family, and has anunknown ligand. It has been previously reported in various regions of the brain, within a subset of T-lymphocytes, and by RT-PCR at low levels in heart, kidney, liver, and otherorgans.

As research continues to unravel the molecular basis of regulatory T cells (Treg), FOXP3 has emerged as a key player in orchestrating development and function of natural Treg. Two recent publications identified GPR83 as specifically upregulated in fresh and activated CD4+ CD25+ Treg cells. Both groups performed gene expression profiling on Treg, and other T cells to identify differentially regulated genes. Sugimoto et al. performed additional mRNA and protein expression analysis based on the results of their micro array analysis using RT-PCR as well as FACS analysis of GPR83 using anti-GPR83 antibody. These recent findings suggest that GPR83 may be useful as a specific and stable cell surface marker with modulatory properties, and a key molecule for further characterizing the molecular basis of Tregs. IMGENEX proudly offers this Flow and IHC positive GPR83 antibody (IMG-71561), as well as other GPR83, FOXP3, and CD marker antibodies for your Treg research.

Key Publication Findings
•GPR83 is upregulated in both murine and human Treg • Gene analysis, mRNA, and protein expression show that GPR83 is upregulated in FOXP3+ cells
• GPR83 is expressed in both fresh and activated Treg
• GPR83 appears to be FOXP3 dependent, although Hansen et al. suggests that induction of FOXP3+
Treg by GPR83 occurs in vivo, suggesting a more complex relationship
• GPR83 is found in both Thymus and Spleen/LN CD4 and CD25 cells
• Foxp3 retroviral transduced CD25- CD4+ cells induces GPR83 expression at much higher levels than mock-transduced cells
• Suggests a possible ligand that binds to GPR83 in vivo which confers to these cells suppressive activity.

Bioinformatics

February 24th, 2008

Last ten years many new advances technology is available for researching in molecular biology which is allowed the increasingly rapid sequencing of much portion of the genomes of any kind of species. In fact many kind of bacterial genomes and also simple and complex eukaryotes have sequenced completely. Genome Project is design to sequence whole 24 of the human chromosome which is also processing and fake draft was complete in spring of 2000. Many famous sequence database like EMBL and Gen Bank which is growing exponentially. This inundate of knowledge is necessary the careful data storage indexing of information and organization. Knowledge of science which is use for biology is called Bioinformatics. In other word Bioinformatics is the annotation, recording, analysis, storage and searching of nucleic acid sequence, structure knowledge and protein sequence. This process also include database of structural information, method of access, visualize, information retrieve and sequence.
Sequence data which is store generally use to make prediction of the functionality of newly search genes. Facilities of sequence data:
(1) Search and analysis the gene and genome organization and also analysis their evolution.
(2) Protein sequence prediction from dna.
(3) Identify regulate element in gene or RNA
(4) Identify mutation which is show in disease
In this way we can also say that Bioinformatics is the special and advance part of science which is use for biology, information technology and computer science associate into a single discipline. The main target of this advance technology is to search new biological insights which are also create global object which is unique principles of Biology. One very simpler task use Bioinformatics concerns the maintenance and creation of database biological knowledge. Sequence of nucleic acid contains the majority of this database. When ever storage and organization of billions nucleotides which is far form trivial and designing or develop a database and interface where researcher access this information.

Know Your Plastics

February 24th, 2008

Plastic plays an important role in our modern world. Plastic can be molded into almost any shape because of its long chain polymer molecules. The majority of plastics are produced from oil and natural gas. There are more than ten thousand types of plastic in use today. Hydrocarbons can be linked in different ways to make many different kinds of plastic polymer. Each type has its own specific qualities. For example, when polymer strands are held tightly together, the plastic is stiff and tough. When the strands can slip easily over one another, the plastic is very flexible and bendable. There are seven main types of plastics in use today.
Polyethylene is very tough, yet it maintains soft, flexible qualities. This is one of the most widely used types of plastic. Most people would recognize it as the type of plastic we use for soda bottles, plastic grocery bags, toys and shampoo bottles. Developed in 1933, polyethylene is one of the oldest types of plastic around.
High density polyethylene is more commonly recognized as HDPE. HDPE is especially tough. It is basically a thicker, denser form of polyethylene. It is harder and more opaque than polyethylene. HDPE is used to make plastic trash cans, thicker toys (like rubber duckies), laundry detergent bottles and milk jugs.
Low density polyethylene is what we refer to as LDPE. The polymers are more loosely packed. LDPE plastic is very light and flexible. This is the type of plastic used for packaging bread and for kitchen food-wrap. It is also used for making various containers and the plastic rings that hold together six-packs.
PVC, or polyvinyl chloride, is one of the hardest plastics around. Most people are familiar with what a white PVC pipe is. It is also used for sewer pipes and widely used in construction as a building material. Vinyl siding and credit cards are other common uses. When softened with plasticizers, it can be used to make medical blood bags, shoes and upholstery.
Polypropylene is a rugged plastic that is highly resistant to most acids and solvents. Therefore, it is the plastic of choice for containing medicines and harsh chemicals. Polypropylene is used to make photographic film because the plastic isn’t harmed by all the chemicals used to develop film. Polypropylene is somewhat flexible but resistant to wearing out, so it’s used on hinged caps for products like mints or liquid coffee creamer.
Polystyrene is hard and clear when it is molded. It is used to make CD cases. If you inject it with tiny gas bubbles, you get the light-weight foam used to package eggs. It’s a good insulator and is used to make coffee cups and plastic cutlery as well. It is used most commonly to make Styrofoam.
The last type we’ll discuss here is Polycarbonate. Polycarbonate is super strong, very hard to break and can withstand a lot of heat. We use it to house electronics, make MP3 players, compact discs and DVDs. Because it has high optical and mechanical properties, it is also used to produce sunglass lenses and safety glasses.

Effect of introducing alien species into an ecosystem

February 24th, 2008

Introduction

The alien species means an organism which is not indigenous to the place and they have been introduced either accidentally or intentionally transported to these new location human activities

The great increase in the introduction of alien species that people are importing for economic, aesthetic, accidental, or even the complex reasons is leading to more species invading native ecosystems, which bring about results: they become invasive alien species (IAS) that have significant harmful effects on both ecosystems and economies.

The impacts on the ecosystems to this world continue to grow due to the increasing population and expanding levels of consumption, mean that more people are demanding more of nature’s goods and services, hence pushing against the limits of sustainability. One serious aspect in this economic globalization is the movement of organisms from one part to another through trade, tourism or any other transport, many of these movements of organisms into new ecosystems where they become alien are generally beneficial or interested by the individual or specific group of the people, but the majority meet many and serious impact. And in a few cases, especially disease organisms and pests of forests or agricultural crops, the alien species is clearly harmful to all, or nearly so. Similarly, those who have been responsible for accidentally introducing species into new habitats may not have been willing to make the dealings necessary to prevent such accidents from occurring. They may not have understood the dangers, and in any case the dangers would be unlikely to have much economic impact on their own welfare, instead, the costs of such accidents are bear excessively by people other than those who are permitting the accidents to happen.

However the problem of introducing the alien species is on the man and it is caused by the following reasons. A/ People are largely responsible for moving the eggs, vegetative part, and the whole organism from one place to another, especially through modern global transport and the travel. B/ while some species are capable of invading well-protected ’intact’’ ecosystem, IAS more often seem to invade habitants altered by the humans, such as the agriculture fields human settlement, and the roadways. C/ Many alien species are intentionally introduced for economic reasons, a major human Endeavour .D/ The dimensions of the problem of invasive alien species are defined by people, and the response is also designed and implemented by people, with differential impacts on different groups of people.
The fauna and flora which are found in any particular location have been greatly influenced by past human activities, and people are likely to have an even greater impact in the future. This leads to the reflection of whether the current experience of globalization might lead to increased diversity in at least some places after the dust settles on the current extinction contraction. As one example, New Zealand has twice as many plants today as it did when humans first arrived, as well as a whole collection of new mammals; one tragic cost was the loss of an extensive unique fauna of birds. Further development of biotic communities as climates change will depend on organisms invading into origin habitats, sometimes hybridizing with the native species, sometimes replacing them, and sometimes adding to the diversity of the ecosystem with new species interactions. Through introducing species, humans are creating their own ecosystems, often more or less by accident, and disturbing ecosystems that had evolved over millions of years.
Humans apparently evolved in Africa, and then Homo sapiens spread to Europe and Asia over 100,000 years ago, Australia 40-60,000 years ago, the Americas about 15-20,000 years ago, and the far reaches of the Pacific less than 1000 years ago. Our species is a good example of a naturally invasive species, spreading quickly, modifying ecosystems through the use of fire, and driving other species too furthermore
For at least several thousand years, armies have been an important pathway for moving species from one region to another, with at least some of these becoming invasive (like the armies). The spread of new diseases by armies is well known. For example, measles were carried into the Americas from Europe by the early conquistadors and perhaps syphilis went in the opposite direction a virus that is a close relative of measles is native to the Steppes of Central Asia, but it frequently swept through Europe, being carried by cattle moved to feed armies during military campaigns. Africa remained free of this disease until 1887, when it appeared in Eritrea at the site of the Italian invasion, spreading through Ethiopia in 1888 and conquering the entire continent in less than a decade. In some parts of Africa, rinderpest was followed by wars and cattle raids as the tribal pastoralists sought to maintain their herds. Another result was that rinderpest led an ecological revolution against people and cattle and in favors of wildlife species that were resistant to the disease.
In general there are some mostly impact of introducing alien species this is that it destroy the nature of the ecosystem, it cause the spreading of disease organism such as small pox, syphilis, etc, also in other way it introduce the new species which can be more importance than the previous species to the eco system such as the introduction of a certain type of fishes (sangara) in the lake Tanganyika which become more famous than the previous specious.